ggpattern——ggplot2的好帮手

生信宝典

共 9307字,需浏览 19分钟

 ·

2022-07-12 20:24


ggplot2强大的图形可视化能力使得R语言成为科研绘图的佼佼者,因此也衍生出了一系列辅助包,在ggplot2绘图的基础上进行补充、完善、美化。今天为大家带来的ggpattern就是一款十分实用、易上手且趣味性十足的辅助包,ggplot2的输出的每一种geom_几何对象都能在ggpattern里找到对应的geom_pattern进行填充,并且函数及参数对应度很高,用法很相似,除了内嵌的固定用法以外,用户还可以根据自己的喜好自定义,相当人性化,小伙伴们不要错过哦。


#安装并加载,可在cran直接获得install.packages('ggplot2')install.packages('ggpattern') library(ggplot2)library(ggpattern)
#填充样式df <- data.frame(level = c("a", "b", "c", 'd'), outcome = c(2.3, 1.9, 3.2, 1))ggplot(df, aes(level, outcome)) +  geom_col_pattern(    aes(pattern = level, pattern_angle = level, pattern_spacing = level),     fill            = 'white',    colour          = 'black',     pattern_density = 0.35,     pattern_fill    = 'black',    pattern_colour  = 'black'  ) +  theme_bw() +  labs(    title    = "ggpattern::geom_col_pattern()",    subtitle = 'geometry-based patterns'  ) +  scale_pattern_spacing_discrete(range = c(0.01, 0.05)) +   theme(legend.position = 'none') +   coord_fixed(ratio = 1)

#调整颜色ggplot(df, aes(level, outcome)) +  geom_col_pattern(    aes(pattern = level, fill = level, pattern_fill = level),     colour                   = 'black',     pattern_density          = 0.35,     pattern_key_scale_factor = 1.3) +  theme_bw() +  labs(    title    = "ggpattern::geom_col_pattern()",    subtitle = 'geometry-based patterns'  ) +  scale_pattern_fill_manual(values = c(a='blue', b='red', c='yellow', d='darkgreen')) +   theme(legend.position = 'none') +   coord_fixed(ratio = 1)

接下来展示一下常用图形的填充方法。


#geom_bar_pattern()ggplot(mpg, aes(class)) +  geom_bar_pattern(    aes(      pattern = class,       pattern_angle = class    ),     fill            = 'white',     colour          = 'black',    pattern_spacing = 0.025  ) +  theme_bw(18) +  labs(title = "ggpattern::geom_bar_pattern()") +   theme(legend.position = 'none') +  coord_fixed(ratio = 1/15) +   scale_pattern_discrete(guide = guide_legend(nrow = 1))

#pie graphdf <- data.frame(  group = factor(c("Cool", "But", "Use", "Less"), levels = c("Cool", "But", "Use", "Less")),  value = c(10, 20, 30, 40))ggplot(df, aes(x="", y = value, pattern = group, pattern_angle = group))+  geom_bar_pattern(    width                = 1,     stat                 = "identity",     fill                 = 'white',     colour               = 'black',    pattern_aspect_ratio = 1,     pattern_density      = 0.3  ) +  coord_polar("y", start=0) +   theme_void(20) +   theme(    legend.key.size = unit(2, 'cm')  ) +   labs(title = "ggpattern::geom_bar_pattern() + coord_polar()")


#geom_bin2d_pattern()ggplot(diamonds, aes(x, y)) +   xlim(4, 10) + ylim(4, 10) +  geom_bin2d_pattern(aes(pattern_spacing = ..density..), fill = 'white', bins = 6, colour = 'black', size = 1) +  theme_bw(18) +  theme(legend.position = 'none') +   labs(title = "ggpattern::geom_bin2d_pattern()")

#geom_boxplot_pattern()ggplot(mpg, aes(class, hwy)) +  geom_boxplot_pattern(    aes(      pattern      = class,       pattern_fill = class    ),     pattern_spacing = 0.03  ) +  theme_bw(18) +  labs(title = "ggpattern::geom_boxplot_pattern()") +   theme(legend.position = 'none') +   coord_fixed(1/8)

#geom_col_pattern()df <- data.frame(trt = c("a", "b", "c"), outcome = c(2.3, 1.9, 3.2))ggplot(df, aes(trt, outcome)) +  geom_col_pattern(    aes(      pattern = trt,       fill    = trt    ),     colour                   = 'black',     pattern_density          = 0.5,     pattern_key_scale_factor = 1.11  ) +  theme_bw(18) +  labs(title = "ggpattern::geom_col_pattern()") +   theme(legend.position = 'none') +    coord_fixed(ratio = 1/2)

#geom_crossbar_pattern()df <- data.frame(  trt = factor(c(1, 1, 2, 2)),  resp = c(1, 5, 3, 4),  group = factor(c(1, 2, 1, 2)),  upper = c(1.1, 5.3, 3.3, 4.2),  lower = c(0.8, 4.6, 2.4, 3.6))ggplot(df, aes(trt, resp, colour = group)) +  geom_crossbar_pattern(    aes(      ymin          = lower,       ymax          = upper,       pattern_angle = trt,       pattern       = group    ), width        = 0.2,     pattern_spacing = 0.02  ) +  theme_bw(18) +  labs(title = "ggpattern::geom_crossbar_pattern()") +   theme(legend.position = 'none') +   coord_fixed(ratio = 1/3)

#geom_density_pattern()ggplot(mtcars) +  geom_density_pattern(    aes(      x            = mpg,       pattern_fill = as.factor(cyl),       pattern      = as.factor(cyl)    ),     fill                     = 'white',     pattern_key_scale_factor = 1.2,    pattern_density          = 0.4  ) +  theme_bw(18) +  labs(title = "ggpattern::geom_density_pattern()") +   theme(legend.key.size = unit(2, 'cm')) +  coord_fixed(ratio = 100)

.

#geom_map_pattern()crimes <- data.frame(state = tolower(rownames(USArrests)), USArrests)states_map <- map_data("state")ggplot(crimes, aes(map_id = state)) +  geom_map_pattern(    aes(      # fill            = Murder,      pattern_fill    = Murder,      pattern_spacing = state,      pattern_density = state,      pattern_angle   = state,      pattern         = state    ),    fill   = 'white',    colour = 'black',    pattern_aspect_ratio = 1.8,    map    = states_map  ) +  expand_limits(x = states_map$long, y = states_map$lat) +  coord_map() +  theme_bw(18) +  labs(title = "ggpattern::geom_map_pattern()") +   scale_pattern_density_discrete(range = c(0.01, 0.3)) +   scale_pattern_spacing_discrete(range = c(0.01, 0.03)) +   theme(legend.position = 'none')

#geom_polygon_pattern()angle <- seq(0, 2*pi, length.out = 7) + pi/6polygon_df <- data.frame(  angle = angle,  x     = cos(angle),  y     = sin(angle))ggplot(polygon_df) +  geom_polygon_pattern(    aes(x = x, y = y),     fill            = 'white',     colour          = 'black',     pattern_spacing = 0.15,     pattern_density = 0.4,     pattern_fill    = 'lightblue',     pattern_colour  = '#002366',    pattern_angle   = 45  ) +   labs(title = "ggpattern") +   coord_equal() +   theme_bw(25) +   theme(axis.title = element_blank())

#geom_rect_pattern()plot_df <- data.frame(  xmin    = c(0, 10),  xmax    = c(8, 18),  ymin    = c(0, 10),  ymax    = c(5, 19),  type    = c('a', 'b'),  angle   = c(45, 0),  pname   = c('circle', 'circle'),  pcolour = c('red', 'blue'),  pspace  = c(0.03, 0.05),  size    = c(0.5, 1),  stringsAsFactors = FALSE)ggplot(plot_df) +  geom_rect_pattern(    aes(      xmin=xmin, ymin=ymin, xmax=xmax, ymax=ymax,      pattern_angle   = I(angle),      pattern_colour  = I(pcolour),      pattern_spacing = I(pspace),      pattern_size    = I(size)    ),    pattern         = 'circle',    fill            = 'white',    colour          = 'black',    pattern_density = 0.3  ) +  theme_bw(18) +  labs(title = "ggpattern::geom_rect_pattern()") +   theme(legend.key.size = unit(1.5, 'cm'))

#geom_ribbon_pattern()huron <- data.frame(year = 1875:1972, level = as.vector(LakeHuron))ggplot(huron, aes(year)) +  geom_ribbon_pattern(    aes(      ymin = level - 1,       ymax = level + 1    ),     fill            = NA,     colour          = 'black',    pattern         = 'circle',    pattern_spacing = 0.03,     pattern_density = 0.5,    pattern_angle   = 30,    outline.type    = 'legacy'  ) +  theme_bw(18) +  labs(title = "ggpattern::geom_ribbon_pattern()")

#geom_sf_pattern()nc <- sf::st_read(system.file("shape/nc.shp", package = "sf"), quiet = TRUE)nc <- nc  %>% filter(between(CNTY_ID, 1820, 1830))ggplot(nc) +  geom_sf_pattern(    aes(      pattern = NAME,       fill    = NAME    ),    pattern_aspect_ratio = 2.8  ) +  theme_bw(15) +   theme(legend.key.size = unit(1.5, 'cm')) +  labs(title = "ggpattern::geom_sf_pattern()")

#geom_tile_pattern()df <- data.frame(  x = rep(c(2, 5, 7, 9, 12), 2),  y = rep(c(1, 2), each = 5),  z = factor(rep(1:5, each = 2)),  w = rep(diff(c(0, 4, 6, 8, 10, 14)), 2))ggplot(df, aes(x, y)) +  geom_tile_pattern(    aes(      fill    = z,       pattern = z    ),     colour = "grey50"  ) +  theme_bw(18) +  labs(title = "ggpattern::geom_tile_pattern()") +   theme(    legend.position = 'bottom',    legend.key.size = unit(1.5, 'cm')  ) +   coord_fixed(ratio = 4)

#geom_violin_pattern()ggplot(mtcars, aes(as.factor(cyl), mpg)) +  geom_violin_pattern(aes(pattern = as.factor(cyl))) +  theme_bw(18) +  labs(title = "ggpattern::geom_violin_pattern()") +   theme(    legend.key.size  = unit(2, 'cm')  ) +   coord_fixed(1/15)


----------------------------分界线----------------------------------

前几期我们的Small Dragon小伙伴分享了一个绘制动态图的包gganimate,本篇推文也接近尾声了,再给大家展示一下ggpattern和gganimate的结合,让你的个性化填充动起来!


library(ggpattern)library(gganimate)df1 <- data.frame(time = 1, offset = 0    , trt = c("a", "b", "c"), outcome = c(2.3, 1.9, 3.2), stringsAsFactors = FALSE)df2 <- data.frame(time = 2, offset = 0.045, trt = c("a", "b", "c"), outcome = c(2.3, 1.9, 3.2), stringsAsFactors = FALSE)df  <- rbind(df1, df2)p <- ggplot(df, aes(trt, outcome)) +    geom_col_pattern(      aes(        pattern_fill    = trt,         pattern_xoffset = I(offset),         pattern_yoffset = I(-offset)      ),       colour          = 'black',       fill            = 'white',      pattern_density = 0.5,      pattern_angle   = 45    ) +    theme_bw() +    labs(title = "ggpattern + gganimate") +     theme(legend.position = 'none') +     coord_fixed(ratio = 1/2) p <- p + transition_states(time, transition_length = 2,                             state_length = 0, wrap = FALSE)

除此之外,还有很多实用和有趣的函数与功能没有展示出来,小伙伴们感兴趣的话可以阅读原文献并且自己研究一下,会很受裨益。

往期精品(点击图片直达文字对应教程)

机器学习

后台回复“生信宝典福利第一波”或点击阅读原文获取教程合集



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