ggpattern——ggplot2的好帮手
ggplot2强大的图形可视化能力使得R语言成为科研绘图的佼佼者，因此也衍生出了一系列辅助包，在ggplot2绘图的基础上进行补充、完善、美化。今天为大家带来的ggpattern就是一款十分实用、易上手且趣味性十足的辅助包，ggplot2的输出的每一种geom_几何对象都能在ggpattern里找到对应的geom_pattern进行填充，并且函数及参数对应度很高，用法很相似，除了内嵌的固定用法以外，用户还可以根据自己的喜好自定义，相当人性化，小伙伴们不要错过哦。
#安装并加载，可在cran直接获得install.packages('ggplot2')install.packages('ggpattern')library(ggplot2)library(ggpattern)
#填充样式df <- data.frame(level = c("a", "b", "c", 'd'), outcome = c(2.3, 1.9, 3.2, 1))ggplot(df, aes(level, outcome)) +geom_col_pattern(aes(pattern = level, pattern_angle = level, pattern_spacing = level),fill = 'white',colour = 'black',pattern_density = 0.35,pattern_fill = 'black',pattern_colour = 'black') +theme_bw() +labs(title = "ggpattern::geom_col_pattern()",subtitle = 'geometry-based patterns') +scale_pattern_spacing_discrete(range = c(0.01, 0.05)) +theme(legend.position = 'none') +coord_fixed(ratio = 1)
#调整颜色ggplot(df, aes(level, outcome)) +geom_col_pattern(aes(pattern = level, fill = level, pattern_fill = level),colour = 'black',pattern_density = 0.35,pattern_key_scale_factor = 1.3) +theme_bw() +labs(title = "ggpattern::geom_col_pattern()",subtitle = 'geometry-based patterns') +scale_pattern_fill_manual(values = c(a='blue', b='red', c='yellow', d='darkgreen')) +theme(legend.position = 'none') +coord_fixed(ratio = 1)
接下来展示一下常用图形的填充方法。
#geom_bar_pattern()ggplot(mpg, aes(class)) +geom_bar_pattern(aes(pattern = class,pattern_angle = class),fill = 'white',colour = 'black',pattern_spacing = 0.025) +theme_bw(18) +labs(title = "ggpattern::geom_bar_pattern()") +theme(legend.position = 'none') +coord_fixed(ratio = 1/15) +scale_pattern_discrete(guide = guide_legend(nrow = 1))
#pie graphdf <- data.frame(group = factor(c("Cool", "But", "Use", "Less"), levels = c("Cool", "But", "Use", "Less")),value = c(10, 20, 30, 40))ggplot(df, aes(x="", y = value, pattern = group, pattern_angle = group))+geom_bar_pattern(width = 1,stat = "identity",fill = 'white',colour = 'black',pattern_aspect_ratio = 1,pattern_density = 0.3) +coord_polar("y", start=0) +theme_void(20) +theme(legend.key.size = unit(2, 'cm')) +labs(title = "ggpattern::geom_bar_pattern() + coord_polar()")
#geom_bin2d_pattern()ggplot(diamonds, aes(x, y)) +xlim(4, 10) + ylim(4, 10) +geom_bin2d_pattern(aes(pattern_spacing = ..density..), fill = 'white', bins = 6, colour = 'black', size = 1) +theme_bw(18) +theme(legend.position = 'none') +labs(title = "ggpattern::geom_bin2d_pattern()")
#geom_boxplot_pattern()ggplot(mpg, aes(class, hwy)) +geom_boxplot_pattern(aes(pattern = class,pattern_fill = class),pattern_spacing = 0.03) +theme_bw(18) +labs(title = "ggpattern::geom_boxplot_pattern()") +theme(legend.position = 'none') +coord_fixed(1/8)
#geom_col_pattern()df <- data.frame(trt = c("a", "b", "c"), outcome = c(2.3, 1.9, 3.2))ggplot(df, aes(trt, outcome)) +geom_col_pattern(aes(pattern = trt,fill = trt),colour = 'black',pattern_density = 0.5,pattern_key_scale_factor = 1.11) +theme_bw(18) +labs(title = "ggpattern::geom_col_pattern()") +theme(legend.position = 'none') +coord_fixed(ratio = 1/2)
#geom_crossbar_pattern()df <- data.frame(trt = factor(c(1, 1, 2, 2)),resp = c(1, 5, 3, 4),group = factor(c(1, 2, 1, 2)),upper = c(1.1, 5.3, 3.3, 4.2),lower = c(0.8, 4.6, 2.4, 3.6))ggplot(df, aes(trt, resp, colour = group)) +geom_crossbar_pattern(aes(ymin = lower,ymax = upper,pattern_angle = trt,pattern = group), width = 0.2,pattern_spacing = 0.02) +theme_bw(18) +labs(title = "ggpattern::geom_crossbar_pattern()") +theme(legend.position = 'none') +coord_fixed(ratio = 1/3)
#geom_density_pattern()+geom_density_pattern(aes(x = mpg,pattern_fill = as.factor(cyl),pattern = as.factor(cyl)fill = 'white',pattern_key_scale_factor = 1.2,pattern_density = 0.4++= "ggpattern::geom_density_pattern()") += unit(2, 'cm')) += 100)
.
#geom_map_pattern()crimes <- data.frame(state = tolower(rownames(USArrests)), USArrests)states_map <- map_data("state")ggplot(crimes, aes(map_id = state)) +geom_map_pattern(aes(# fill = Murder,pattern_fill = Murder,pattern_spacing = state,pattern_density = state,pattern_angle = state,pattern = state),fill = 'white',colour = 'black',pattern_aspect_ratio = 1.8,map = states_map) +expand_limits(x = states_map$long, y = states_map$lat) +coord_map() +theme_bw(18) +labs(title = "ggpattern::geom_map_pattern()") +scale_pattern_density_discrete(range = c(0.01, 0.3)) +scale_pattern_spacing_discrete(range = c(0.01, 0.03)) +theme(legend.position = 'none')
#geom_polygon_pattern()angle <- seq(0, 2*pi, length.out = 7) + pi/6polygon_df <- data.frame(angle = angle,x = cos(angle),y = sin(angle))ggplot(polygon_df) +geom_polygon_pattern(aes(x = x, y = y),fill = 'white',colour = 'black',pattern_spacing = 0.15,pattern_density = 0.4,pattern_fill = 'lightblue',pattern_colour = '#002366',pattern_angle = 45) +labs(title = "ggpattern") +coord_equal() +theme_bw(25) +theme(axis.title = element_blank())
#geom_rect_pattern()plot_df <- data.frame(xmin = c(0, 10),xmax = c(8, 18),ymin = c(0, 10),ymax = c(5, 19),type = c('a', 'b'),angle = c(45, 0),pname = c('circle', 'circle'),pcolour = c('red', 'blue'),pspace = c(0.03, 0.05),size = c(0.5, 1),stringsAsFactors = FALSE)ggplot(plot_df) +geom_rect_pattern(aes(xmin=xmin, ymin=ymin, xmax=xmax, ymax=ymax,pattern_angle = I(angle),pattern_colour = I(pcolour),pattern_spacing = I(pspace),pattern_size = I(size)),pattern = 'circle',fill = 'white',colour = 'black',pattern_density = 0.3) +theme_bw(18) +labs(title = "ggpattern::geom_rect_pattern()") +theme(legend.key.size = unit(1.5, 'cm'))
#geom_ribbon_pattern()huron <- data.frame(year = 1875:1972, level = as.vector(LakeHuron))ggplot(huron, aes(year)) +geom_ribbon_pattern(aes(ymin = level - 1,ymax = level + 1),fill = NA,colour = 'black',pattern = 'circle',pattern_spacing = 0.03,pattern_density = 0.5,pattern_angle = 30,outline.type = 'legacy') +theme_bw(18) +labs(title = "ggpattern::geom_ribbon_pattern()")
#geom_sf_pattern()nc <- sf::st_read(system.file("shape/nc.shp", package = "sf"), quiet = TRUE)nc <- nc %>% filter(between(CNTY_ID, 1820, 1830))ggplot(nc) +geom_sf_pattern(aes(pattern = NAME,fill = NAME),pattern_aspect_ratio = 2.8) +theme_bw(15) +theme(legend.key.size = unit(1.5, 'cm')) +labs(title = "ggpattern::geom_sf_pattern()")
#geom_tile_pattern()df <- data.frame(x = rep(c(2, 5, 7, 9, 12), 2),y = rep(c(1, 2), each = 5),z = factor(rep(1:5, each = 2)),w = rep(diff(c(0, 4, 6, 8, 10, 14)), 2))ggplot(df, aes(x, y)) +geom_tile_pattern(aes(fill = z,pattern = z),colour = "grey50") +theme_bw(18) +labs(title = "ggpattern::geom_tile_pattern()") +theme(legend.position = 'bottom',legend.key.size = unit(1.5, 'cm')) +coord_fixed(ratio = 4)
#geom_violin_pattern()ggplot(mtcars, aes(as.factor(cyl), mpg)) +geom_violin_pattern(aes(pattern = as.factor(cyl))) +theme_bw(18) +labs(title = "ggpattern::geom_violin_pattern()") +theme(legend.key.size = unit(2, 'cm')) +coord_fixed(1/15)
----------------------------分界线----------------------------------前几期我们的Small Dragon小伙伴分享了一个绘制动态图的包gganimate，本篇推文也接近尾声了，再给大家展示一下ggpattern和gganimate的结合，让你的个性化填充动起来！
library(ggpattern)library(gganimate)df1 <- data.frame(time = 1, offset = 0 , trt = c("a", "b", "c"), outcome = c(2.3, 1.9, 3.2), stringsAsFactors = FALSE)df2 <- data.frame(time = 2, offset = 0.045, trt = c("a", "b", "c"), outcome = c(2.3, 1.9, 3.2), stringsAsFactors = FALSE)df <- rbind(df1, df2)p <- ggplot(df, aes(trt, outcome)) +geom_col_pattern(aes(pattern_fill = trt,pattern_xoffset = I(offset),pattern_yoffset = I(-offset)),colour = 'black',fill = 'white',pattern_density = 0.5,pattern_angle = 45) +theme_bw() +labs(title = "ggpattern + gganimate") +theme(legend.position = 'none') +coord_fixed(ratio = 1/2)p <- p + transition_states(time, transition_length = 2,state_length = 0, wrap = FALSE)
除此之外，还有很多实用和有趣的函数与功能没有展示出来，小伙伴们感兴趣的话可以阅读原文献并且自己研究一下，会很受裨益。
往期精品(点击图片直达文字对应教程)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
后台回复“生信宝典福利第一波”或点击阅读原文获取教程合集
评论